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Dataset: nanopubs (development version)

Nanopublications are small units of publishable information, used for scientific results and more. This dataset is based on a subset of a dump of all available nanopublications as of April 5, 2018. Only the first 5M of freely-licensed nanopubs were included. Each nanopub consists of several RDF graphs and thus is an RDF dataset. The included data is primarily from the biomedical domain. More information: paper, website.

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Download this metadata in RDF: Turtle, N-Triples, RDF/XML, Jelly
Source repository: dataset-nanopubs
Permanent URL: https://w3id.org/riverbench/datasets/nanopubs/dev

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0000000000.trig
PREFIX dct:           <http://purl.org/dc/terms/>
PREFIX dgn-gda:       <http://rdf.disgenet.org/gene-disease-association.ttl#>
PREFIX dgn-np:        <http://rdf.disgenet.org/nanopublications.trig#>
PREFIX dgn-void:      <http://rdf.disgenet.org/v2.1.0/void.ttl#>
PREFIX eco:           <http://purl.obolibrary.org/obo/eco.owl#>
PREFIX lld:           <http://linkedlifedata.com/resource/umls/id/>
PREFIX miriam-gene:   <http://identifiers.org/ncbigene/>
PREFIX miriam-pubmed: <http://identifiers.org/pubmed/>
PREFIX ncit:          <http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#>
PREFIX np:            <http://www.nanopub.org/nschema#>
PREFIX orcid:         <http://orcid.org/>
PREFIX pav:           <http://purl.org/pav/2.0/>
PREFIX prov:          <http://www.w3.org/ns/prov#>
PREFIX prv:           <http://purl.org/net/provenance/ns#>
PREFIX rdfs:          <http://www.w3.org/2000/01/rdf-schema#>
PREFIX sio:           <http://semanticscience.org/resource/>
PREFIX this:          <http://rdf.disgenet.org/nanopublications.trig#NP3.RArjAyAOZ9X8d5YFYIeOA_aZPqZPfIICWYn7_aN205Y58>
PREFIX wi:            <http://purl.org/ontology/wi/core#>
PREFIX xsd:           <http://www.w3.org/2001/XMLSchema#>

dgn-np:NP3.RArjAyAOZ9X8d5YFYIeOA_aZPqZPfIICWYn7_aN205Y58130_provenance {
    dgn-void:uniprot-20130724
            pav:importedOn  "2013-07-24"^^xsd:date .

    dgn-void:source_evidence_curated
            a             eco:ECO_0000205;
            rdfs:comment  "Gene-disease associations manually curated."@en;
            rdfs:label    "DisGeNET evidence - CURATED"@en .

    dgn-np:NP3.RArjAyAOZ9X8d5YFYIeOA_aZPqZPfIICWYn7_aN205Y58130_assertion
            dct:description      "[Exome sequencing identifies mitochondrial alanyl-tRNA synthetase mutations in infantile mitochondrial cardiomyopathy.]. Sentence from MEDLINE/PubMed, a database of the U.S. National Library of Medicine."@en;
            wi:evidence          dgn-void:source_evidence_curated;
            sio:SIO_000772       miriam-pubmed:21549344;
            prov:wasDerivedFrom  dgn-void:uniprot-20130724;
            prov:wasGeneratedBy  eco:ECO_0000218 .
}

dgn-np:NP3.RArjAyAOZ9X8d5YFYIeOA_aZPqZPfIICWYn7_aN205Y58130_assertion {
    dgn-gda:DGNf58dcbd569c3b4c1376a56f543f7b369
            a               sio:SIO_001122;
            sio:SIO_000628  lld:C3279793 , miriam-gene:57505 .

    lld:C3279793  a  ncit:C7057 .

    miriam-gene:57505
            a       ncit:C16612 .
}

dgn-np:NP3.RArjAyAOZ9X8d5YFYIeOA_aZPqZPfIICWYn7_aN205Y58130_publicationInfo {
    dgn-void:disgenetrdf
            pav:version  "v2.1.0" .

    dgn-np:NP3.RArjAyAOZ9X8d5YFYIeOA_aZPqZPfIICWYn7_aN205Y58
            dct:created       "2014-10-02T12:31:58+02:00"^^xsd:dateTime;
            dct:rights        <http://opendatacommons.org/licenses/odbl/1.0/>;
            dct:rightsHolder  dgn-void:IBIGroup;
            dct:subject       sio:SIO_000983;
            prv:usedData      dgn-void:disgenetrdf;
            pav:authoredBy    orcid:0000-0003-1244-7654 , orcid:0000-0003-0169-8159 , orcid:0000-0002-9383-528X , orcid:0000-0002-7534-7661 , orcid:0000-0001-5999-6269;
            pav:createdBy     orcid:0000-0003-0169-8159;
            pav:version       "v2.1.0.0" .
}

dgn-np:NP3.RArjAyAOZ9X8d5YFYIeOA_aZPqZPfIICWYn7_aN205Y58130_head {
    dgn-np:NP3.RArjAyAOZ9X8d5YFYIeOA_aZPqZPfIICWYn7_aN205Y58130_publicationInfo
            a       np:PublicationInfo .

    dgn-np:NP3.RArjAyAOZ9X8d5YFYIeOA_aZPqZPfIICWYn7_aN205Y58130_provenance
            a       np:Provenance .

    dgn-np:NP3.RArjAyAOZ9X8d5YFYIeOA_aZPqZPfIICWYn7_aN205Y58130_assertion
            a       np:Assertion .

    dgn-np:NP3.RArjAyAOZ9X8d5YFYIeOA_aZPqZPfIICWYn7_aN205Y58
            a                      np:Nanopublication;
            np:hasAssertion        dgn-np:NP3.RArjAyAOZ9X8d5YFYIeOA_aZPqZPfIICWYn7_aN205Y58130_assertion;
            np:hasProvenance       dgn-np:NP3.RArjAyAOZ9X8d5YFYIeOA_aZPqZPfIICWYn7_aN205Y58130_provenance;
            np:hasPublicationInfo  dgn-np:NP3.RArjAyAOZ9X8d5YFYIeOA_aZPqZPfIICWYn7_aN205Y58130_publicationInfo .
}
0000000010.trig
PREFIX dct:           <http://purl.org/dc/terms/>
PREFIX dgn-gda:       <http://rdf.disgenet.org/gene-disease-association.ttl#>
PREFIX dgn-np:        <http://rdf.disgenet.org/nanopublications.trig#>
PREFIX dgn-void:      <http://rdf.disgenet.org/v2.1.0/void.ttl#>
PREFIX eco:           <http://purl.obolibrary.org/obo/eco.owl#>
PREFIX lld:           <http://linkedlifedata.com/resource/umls/id/>
PREFIX miriam-gene:   <http://identifiers.org/ncbigene/>
PREFIX miriam-pubmed: <http://identifiers.org/pubmed/>
PREFIX ncit:          <http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#>
PREFIX np:            <http://www.nanopub.org/nschema#>
PREFIX orcid:         <http://orcid.org/>
PREFIX pav:           <http://purl.org/pav/2.0/>
PREFIX prov:          <http://www.w3.org/ns/prov#>
PREFIX prv:           <http://purl.org/net/provenance/ns#>
PREFIX rdfs:          <http://www.w3.org/2000/01/rdf-schema#>
PREFIX sio:           <http://semanticscience.org/resource/>
PREFIX this:          <http://rdf.disgenet.org/nanopublications.trig#NP61.RAsbhJ40BalQb44OIUQYSL_adTXcOJshYv5IkhE8QVUSs>
PREFIX wi:            <http://purl.org/ontology/wi/core#>
PREFIX xsd:           <http://www.w3.org/2001/XMLSchema#>

dgn-np:NP61.RAsbhJ40BalQb44OIUQYSL_adTXcOJshYv5IkhE8QVUSs130_publicationInfo {
    dgn-void:disgenetrdf
            pav:version  "v2.1.0" .

    dgn-np:NP61.RAsbhJ40BalQb44OIUQYSL_adTXcOJshYv5IkhE8QVUSs
            dct:created       "2014-10-02T12:31:58+02:00"^^xsd:dateTime;
            dct:rights        <http://opendatacommons.org/licenses/odbl/1.0/>;
            dct:rightsHolder  dgn-void:IBIGroup;
            dct:subject       sio:SIO_000983;
            prv:usedData      dgn-void:disgenetrdf;
            pav:authoredBy    orcid:0000-0003-1244-7654 , orcid:0000-0003-0169-8159 , orcid:0000-0002-9383-528X , orcid:0000-0002-7534-7661 , orcid:0000-0001-5999-6269;
            pav:createdBy     orcid:0000-0003-0169-8159;
            pav:version       "v2.1.0.0" .
}

dgn-np:NP61.RAsbhJ40BalQb44OIUQYSL_adTXcOJshYv5IkhE8QVUSs130_assertion {
    dgn-gda:DGNf3d1f792e98a9bb00377c43891ca0d65
            a               sio:SIO_001122;
            sio:SIO_000628  lld:C1845028 , miriam-gene:22 .

    lld:C1845028  a  ncit:C7057 .

    miriam-gene:22  a  ncit:C16612 .
}

dgn-np:NP61.RAsbhJ40BalQb44OIUQYSL_adTXcOJshYv5IkhE8QVUSs130_head {
    dgn-np:NP61.RAsbhJ40BalQb44OIUQYSL_adTXcOJshYv5IkhE8QVUSs130_publicationInfo
            a       np:PublicationInfo .

    dgn-np:NP61.RAsbhJ40BalQb44OIUQYSL_adTXcOJshYv5IkhE8QVUSs130_provenance
            a       np:Provenance .

    dgn-np:NP61.RAsbhJ40BalQb44OIUQYSL_adTXcOJshYv5IkhE8QVUSs130_assertion
            a       np:Assertion .

    dgn-np:NP61.RAsbhJ40BalQb44OIUQYSL_adTXcOJshYv5IkhE8QVUSs
            a                      np:Nanopublication;
            np:hasAssertion        dgn-np:NP61.RAsbhJ40BalQb44OIUQYSL_adTXcOJshYv5IkhE8QVUSs130_assertion;
            np:hasProvenance       dgn-np:NP61.RAsbhJ40BalQb44OIUQYSL_adTXcOJshYv5IkhE8QVUSs130_provenance;
            np:hasPublicationInfo  dgn-np:NP61.RAsbhJ40BalQb44OIUQYSL_adTXcOJshYv5IkhE8QVUSs130_publicationInfo .
}

dgn-np:NP61.RAsbhJ40BalQb44OIUQYSL_adTXcOJshYv5IkhE8QVUSs130_provenance {
    dgn-void:uniprot-20130724
            pav:importedOn  "2013-07-24"^^xsd:date .

    dgn-void:source_evidence_curated
            a             eco:ECO_0000205;
            rdfs:comment  "Gene-disease associations manually curated."@en;
            rdfs:label    "DisGeNET evidence - CURATED"@en .

    dgn-np:NP61.RAsbhJ40BalQb44OIUQYSL_adTXcOJshYv5IkhE8QVUSs130_assertion
            dct:description      "[Mutation of a putative mitochondrial iron transporter gene (ABC7) in X-linked sideroblastic anemia and ataxia (XLSA/A).]. Sentence from MEDLINE/PubMed, a database of the U.S. National Library of Medicine."@en;
            wi:evidence          dgn-void:source_evidence_curated;
            sio:SIO_000772       miriam-pubmed:10196363;
            prov:wasDerivedFrom  dgn-void:uniprot-20130724;
            prov:wasGeneratedBy  eco:ECO_0000218 .
}
0000000100.trig
PREFIX dct:           <http://purl.org/dc/terms/>
PREFIX dgn-gda:       <http://rdf.disgenet.org/gene-disease-association.ttl#>
PREFIX dgn-np:        <http://rdf.disgenet.org/nanopublications.trig#>
PREFIX dgn-void:      <http://rdf.disgenet.org/v2.1.0/void.ttl#>
PREFIX eco:           <http://purl.obolibrary.org/obo/eco.owl#>
PREFIX lld:           <http://linkedlifedata.com/resource/umls/id/>
PREFIX miriam-gene:   <http://identifiers.org/ncbigene/>
PREFIX miriam-pubmed: <http://identifiers.org/pubmed/>
PREFIX ncit:          <http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#>
PREFIX np:            <http://www.nanopub.org/nschema#>
PREFIX orcid:         <http://orcid.org/>
PREFIX pav:           <http://purl.org/pav/2.0/>
PREFIX prov:          <http://www.w3.org/ns/prov#>
PREFIX prv:           <http://purl.org/net/provenance/ns#>
PREFIX rdfs:          <http://www.w3.org/2000/01/rdf-schema#>
PREFIX sio:           <http://semanticscience.org/resource/>
PREFIX this:          <http://rdf.disgenet.org/nanopublications.trig#NP439.RAnAGZRxms51dVhgtkvmSpL_kdz-Vwq5hO4eek71OLjpc>
PREFIX wi:            <http://purl.org/ontology/wi/core#>
PREFIX xsd:           <http://www.w3.org/2001/XMLSchema#>

dgn-np:NP439.RAnAGZRxms51dVhgtkvmSpL_kdz-Vwq5hO4eek71OLjpc130_provenance {
    dgn-void:uniprot-20130724
            pav:importedOn  "2013-07-24"^^xsd:date .

    dgn-void:source_evidence_curated
            a             eco:ECO_0000205;
            rdfs:comment  "Gene-disease associations manually curated."@en;
            rdfs:label    "DisGeNET evidence - CURATED"@en .

    dgn-np:NP439.RAnAGZRxms51dVhgtkvmSpL_kdz-Vwq5hO4eek71OLjpc130_assertion
            dct:description      "[Early-onset Alzheimer disease caused by a new mutation (V717L) in the amyloid precursor protein gene.]. Sentence from MEDLINE/PubMed, a database of the U.S. National Library of Medicine."@en;
            wi:evidence          dgn-void:source_evidence_curated;
            sio:SIO_000772       miriam-pubmed:10867787;
            prov:wasDerivedFrom  dgn-void:uniprot-20130724;
            prov:wasGeneratedBy  eco:ECO_0000218 .
}

dgn-np:NP439.RAnAGZRxms51dVhgtkvmSpL_kdz-Vwq5hO4eek71OLjpc130_head {
    dgn-np:NP439.RAnAGZRxms51dVhgtkvmSpL_kdz-Vwq5hO4eek71OLjpc130_publicationInfo
            a       np:PublicationInfo .

    dgn-np:NP439.RAnAGZRxms51dVhgtkvmSpL_kdz-Vwq5hO4eek71OLjpc130_provenance
            a       np:Provenance .

    dgn-np:NP439.RAnAGZRxms51dVhgtkvmSpL_kdz-Vwq5hO4eek71OLjpc130_assertion
            a       np:Assertion .

    dgn-np:NP439.RAnAGZRxms51dVhgtkvmSpL_kdz-Vwq5hO4eek71OLjpc
            a                      np:Nanopublication;
            np:hasAssertion        dgn-np:NP439.RAnAGZRxms51dVhgtkvmSpL_kdz-Vwq5hO4eek71OLjpc130_assertion;
            np:hasProvenance       dgn-np:NP439.RAnAGZRxms51dVhgtkvmSpL_kdz-Vwq5hO4eek71OLjpc130_provenance;
            np:hasPublicationInfo  dgn-np:NP439.RAnAGZRxms51dVhgtkvmSpL_kdz-Vwq5hO4eek71OLjpc130_publicationInfo .
}

dgn-np:NP439.RAnAGZRxms51dVhgtkvmSpL_kdz-Vwq5hO4eek71OLjpc130_assertion {
    dgn-gda:DGN22056681e342b7a4144ba6539a52f0e6
            a               sio:SIO_001122;
            sio:SIO_000628  lld:C0002395 , miriam-gene:351 .

    lld:C0002395  a  ncit:C7057 .

    miriam-gene:351  a  ncit:C16612 .
}

dgn-np:NP439.RAnAGZRxms51dVhgtkvmSpL_kdz-Vwq5hO4eek71OLjpc130_publicationInfo {
    dgn-void:disgenetrdf
            pav:version  "v2.1.0" .

    dgn-np:NP439.RAnAGZRxms51dVhgtkvmSpL_kdz-Vwq5hO4eek71OLjpc
            dct:created       "2014-10-02T12:31:58+02:00"^^xsd:dateTime;
            dct:rights        <http://opendatacommons.org/licenses/odbl/1.0/>;
            dct:rightsHolder  dgn-void:IBIGroup;
            dct:subject       sio:SIO_000983;
            prv:usedData      dgn-void:disgenetrdf;
            pav:authoredBy    orcid:0000-0003-1244-7654 , orcid:0000-0003-0169-8159 , orcid:0000-0002-9383-528X , orcid:0000-0002-7534-7661 , orcid:0000-0001-5999-6269;
            pav:createdBy     orcid:0000-0003-0169-8159;
            pav:version       "v2.1.0.0" .
}
0000001000.trig
PREFIX dcterms:       <http://purl.org/dc/terms/>
PREFIX dgn-gda:       <http://rdf.disgenet.org/gene-disease-association.ttl#>
PREFIX dgn-np:        <http://rdf.disgenet.org/nanopublications.trig#>
PREFIX dgn-void:      <http://rdf.disgenet.org/v2.1.0/void.ttl#>
PREFIX eco:           <http://purl.obolibrary.org/obo/eco.owl#>
PREFIX lld:           <http://linkedlifedata.com/resource/umls/id/>
PREFIX miriam-gene:   <http://identifiers.org/ncbigene/>
PREFIX miriam-pubmed: <http://identifiers.org/pubmed/>
PREFIX ncit:          <http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#>
PREFIX np:            <http://www.nanopub.org/nschema#>
PREFIX orcid:         <http://orcid.org/>
PREFIX pav:           <http://purl.org/pav/2.0/>
PREFIX prov:          <http://www.w3.org/ns/prov#>
PREFIX prv:           <http://purl.org/net/provenance/ns#>
PREFIX rdfs:          <http://www.w3.org/2000/01/rdf-schema#>
PREFIX sio:           <http://semanticscience.org/resource/>
PREFIX this:          <http://rdf.disgenet.org/nanopublications.trig#NP3991.RAtDyHtF9sry3ePZ1TMnPe4psfjBNyBHcWbqp3nH6rncM>
PREFIX wi:            <http://purl.org/ontology/wi/core#>
PREFIX xsd:           <http://www.w3.org/2001/XMLSchema#>

dgn-np:NP3991.RAtDyHtF9sry3ePZ1TMnPe4psfjBNyBHcWbqp3nH6rncM130_assertion {
    dgn-gda:DGN90b29f35641024053a9fa4b5eaf0ba0a
            a               sio:SIO_001122;
            sio:SIO_000628  lld:C3150921 , miriam-gene:9440 .

    lld:C3150921  a  ncit:C7057 .

    miriam-gene:9440  a  ncit:C16612 .
}

dgn-np:NP3991.RAtDyHtF9sry3ePZ1TMnPe4psfjBNyBHcWbqp3nH6rncM130_provenance {
    dgn-void:uniprot-20130724
            pav:importedOn  "2013-07-24"^^xsd:date .

    dgn-void:source_evidence_curated
            a             eco:ECO_0000205;
            rdfs:comment  "Gene-disease associations manually curated."@en;
            rdfs:label    "DisGeNET evidence - CURATED"@en .

    dgn-np:NP3991.RAtDyHtF9sry3ePZ1TMnPe4psfjBNyBHcWbqp3nH6rncM130_assertion
            dcterms:description  "[Infantile cerebral and cerebellar atrophy is associated with a mutation in the MED17 subunit of the transcription preinitiation mediator complex.]. Sentence from MEDLINE/PubMed, a database of the U.S. National Library of Medicine."@en;
            wi:evidence          dgn-void:source_evidence_curated;
            sio:SIO_000772       miriam-pubmed:20950787;
            prov:wasDerivedFrom  dgn-void:uniprot-20130724;
            prov:wasGeneratedBy  eco:ECO_0000218 .
}

dgn-np:NP3991.RAtDyHtF9sry3ePZ1TMnPe4psfjBNyBHcWbqp3nH6rncM130_head {
    dgn-np:NP3991.RAtDyHtF9sry3ePZ1TMnPe4psfjBNyBHcWbqp3nH6rncM130_publicationInfo
            a       np:PublicationInfo .

    dgn-np:NP3991.RAtDyHtF9sry3ePZ1TMnPe4psfjBNyBHcWbqp3nH6rncM130_provenance
            a       np:Provenance .

    dgn-np:NP3991.RAtDyHtF9sry3ePZ1TMnPe4psfjBNyBHcWbqp3nH6rncM130_assertion
            a       np:Assertion .

    dgn-np:NP3991.RAtDyHtF9sry3ePZ1TMnPe4psfjBNyBHcWbqp3nH6rncM
            a                      np:Nanopublication;
            np:hasAssertion        dgn-np:NP3991.RAtDyHtF9sry3ePZ1TMnPe4psfjBNyBHcWbqp3nH6rncM130_assertion;
            np:hasProvenance       dgn-np:NP3991.RAtDyHtF9sry3ePZ1TMnPe4psfjBNyBHcWbqp3nH6rncM130_provenance;
            np:hasPublicationInfo  dgn-np:NP3991.RAtDyHtF9sry3ePZ1TMnPe4psfjBNyBHcWbqp3nH6rncM130_publicationInfo .
}

dgn-np:NP3991.RAtDyHtF9sry3ePZ1TMnPe4psfjBNyBHcWbqp3nH6rncM130_publicationInfo {
    dgn-void:disgenetrdf
            pav:version  "v2.1.0" .

    dgn-np:NP3991.RAtDyHtF9sry3ePZ1TMnPe4psfjBNyBHcWbqp3nH6rncM
            dcterms:created       "2014-10-02T12:31:59+02:00"^^xsd:dateTime;
            dcterms:rights        <http://opendatacommons.org/licenses/odbl/1.0/>;
            dcterms:rightsHolder  dgn-void:IBIGroup;
            dcterms:subject       sio:SIO_000983;
            prv:usedData          dgn-void:disgenetrdf;
            pav:authoredBy        orcid:0000-0003-1244-7654 , orcid:0000-0003-0169-8159 , orcid:0000-0002-9383-528X , orcid:0000-0002-7534-7661 , orcid:0000-0001-5999-6269;
            pav:createdBy         orcid:0000-0003-0169-8159;
            pav:version           "v2.1.0.0" .
}
0000010000.trig
PREFIX dcterms:       <http://purl.org/dc/terms/>
PREFIX dgn-gda:       <http://rdf.disgenet.org/gene-disease-association.ttl#>
PREFIX dgn-np:        <http://rdf.disgenet.org/nanopublications.trig#>
PREFIX dgn-void:      <http://rdf.disgenet.org/v2.1.0/void.ttl#>
PREFIX eco:           <http://purl.obolibrary.org/obo/eco.owl#>
PREFIX lld:           <http://linkedlifedata.com/resource/umls/id/>
PREFIX miriam-gene:   <http://identifiers.org/ncbigene/>
PREFIX miriam-pubmed: <http://identifiers.org/pubmed/>
PREFIX ncit:          <http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#>
PREFIX np:            <http://www.nanopub.org/nschema#>
PREFIX pav:           <http://purl.org/pav/2.0/>
PREFIX prov:          <http://www.w3.org/ns/prov#>
PREFIX prv:           <http://purl.org/net/provenance/ns#>
PREFIX rdfs:          <http://www.w3.org/2000/01/rdf-schema#>
PREFIX sio:           <http://semanticscience.org/resource/>
PREFIX this:          <http://rdf.disgenet.org/nanopublications.trig#NP13491.RAWza2rXVAvV7aBkfucRutR_G_ymuiTgw9-KFx-b8HbNM>
PREFIX wi:            <http://purl.org/ontology/wi/core#>
PREFIX xsd:           <http://www.w3.org/2001/XMLSchema#>

dgn-np:NP13491.RAWza2rXVAvV7aBkfucRutR_G_ymuiTgw9-KFx-b8HbNM130_head {
    dgn-np:NP13491.RAWza2rXVAvV7aBkfucRutR_G_ymuiTgw9-KFx-b8HbNM130_publicationInfo
            a       np:PublicationInfo .

    dgn-np:NP13491.RAWza2rXVAvV7aBkfucRutR_G_ymuiTgw9-KFx-b8HbNM130_provenance
            a       np:Provenance .

    dgn-np:NP13491.RAWza2rXVAvV7aBkfucRutR_G_ymuiTgw9-KFx-b8HbNM130_assertion
            a       np:Assertion .

    dgn-np:NP13491.RAWza2rXVAvV7aBkfucRutR_G_ymuiTgw9-KFx-b8HbNM
            a                      np:Nanopublication;
            np:hasAssertion        dgn-np:NP13491.RAWza2rXVAvV7aBkfucRutR_G_ymuiTgw9-KFx-b8HbNM130_assertion;
            np:hasProvenance       dgn-np:NP13491.RAWza2rXVAvV7aBkfucRutR_G_ymuiTgw9-KFx-b8HbNM130_provenance;
            np:hasPublicationInfo  dgn-np:NP13491.RAWza2rXVAvV7aBkfucRutR_G_ymuiTgw9-KFx-b8HbNM130_publicationInfo .
}

dgn-np:NP13491.RAWza2rXVAvV7aBkfucRutR_G_ymuiTgw9-KFx-b8HbNM130_provenance {
    dgn-void:source_evidence_curated
            a             eco:ECO_0000205;
            rdfs:comment  "Gene-disease associations manually curated."@en;
            rdfs:label    "DisGeNET evidence - CURATED"@en .

    dgn-void:ctd_human-20130708
            pav:importedOn  "2013-07-24"^^xsd:date .

    dgn-np:NP13491.RAWza2rXVAvV7aBkfucRutR_G_ymuiTgw9-KFx-b8HbNM130_assertion
            dcterms:description  "[To validate the induction of blood lymphocyte cytochrome P450 2E1 (CYP2E1) expression in alcoholic liver cirrhosis and mRNA and protein expression of CYP2E1 in freshly prepared blood lymphocytes of alcoholic liver cirrhotic (ACP), nonalcoholic cirrhotic patients (NACP), alcoholic controls (ACs), and nonalcoholic controls (NACs) were investigated.]. Sentence from MEDLINE/PubMed, a database of the U.S. National Library of Medicine."@en;
            wi:evidence          dgn-void:source_evidence_curated;
            sio:SIO_000772       miriam-pubmed:20843640;
            prov:wasDerivedFrom  dgn-void:ctd_human-20130708;
            prov:wasGeneratedBy  eco:ECO_0000218 .
}

dgn-np:NP13491.RAWza2rXVAvV7aBkfucRutR_G_ymuiTgw9-KFx-b8HbNM130_assertion {
    dgn-gda:DGN538ac99e021f970eb74470f6291e5b65
            a               sio:SIO_001121;
            sio:SIO_000628  lld:C0001973 , miriam-gene:1571 .

    lld:C0001973  a  ncit:C7057 .

    miriam-gene:1571  a  ncit:C16612 .
}

dgn-np:NP13491.RAWza2rXVAvV7aBkfucRutR_G_ymuiTgw9-KFx-b8HbNM130_publicationInfo {
    dgn-void:disgenetrdf
            pav:version  "v2.1.0" .

    dgn-np:NP13491.RAWza2rXVAvV7aBkfucRutR_G_ymuiTgw9-KFx-b8HbNM
            dcterms:created       "2014-10-02T12:32:04+02:00"^^xsd:dateTime;
            dcterms:rights        <http://opendatacommons.org/licenses/odbl/1.0/>;
            dcterms:rightsHolder  dgn-void:IBIGroup;
            dcterms:subject       sio:SIO_000983;
            prv:usedData          dgn-void:disgenetrdf;
            pav:authoredBy        <http://orcid.org/0000-0003-1244-7654> , <http://orcid.org/0000-0003-0169-8159> , <http://orcid.org/0000-0002-9383-528X> , <http://orcid.org/0000-0002-7534-7661> , <http://orcid.org/0000-0001-5999-6269>;
            pav:createdBy         <http://orcid.org/0000-0003-0169-8159>;
            pav:version           "v2.1.0.0" .
}

General information

  1. BibTeX citation: 
    @misc{https://doi.org/10.5281/zenodo.1213293,
  doi = {10.5281/ZENODO.1213293},
  url = {https://zenodo.org/record/1213293},
  author = {Kuhn, Tobias},
  keywords = {nanopublications, provenance},
  language = {en},
  title = {Nanopublication Dump From Server Network},
  publisher = {Zenodo},
  year = {2018},
  copyright = {Creative Commons Attribution-NonCommercial-ShareAlike}
}

Technical metadata

  • Has stream type usage:
    • RDF stream type usage (​1)
    • RDF stream type usage (​2)
      • Type: RDF stream type usage (stax:RdfStreamTypeUsage)
      • Comment: The dataset can be viewed as a stream of RDF datasets. Each RDF dataset corresponds to one nanopublication. (en)
      • Has stream type: RDF dataset stream (stax:datasetStream)
  • Has stream element count: 5,000,000
  • Has stream element split:
  • Uses vocabulary:
  • Conforms to W3C RDF 1.1 specification: yes
  • Conforms to W3C RDF-star draft specification as of December 17, 2021: yes
  • Uses generalized triples: no
  • Uses generalized RDF datasets: no
  • Uses RDF-star: no

Distributions

The dataset is published in a few size variants, each containing a specific number of stream elements. For each size, there are three distribution types available: flat (an N-Triples/N-Quads file in the RDF Message Log format), streaming (a .tar.gz archive with Turtle/TriG files, one file per stream element), and Jelly (a native binary format for streaming RDF). See the documentation for more details.

Distribution size Statements Flat Streaming Jelly
10K 340,000 3.3 MB 2.4 MB 2.5 MB
100K 3,307,350 34.7 MB 24.6 MB 26.1 MB
1M 33,423,542 375.2 MB 267.1 MB 299.1 MB
Full 171,885,662 1.6 GB 981.0 MB 1.3 GB

The full metadata of all distributions can be found below.

Full flat distribution

Full stream distribution

Full Jelly distribution

1M elements flat distribution

1M elements stream distribution

1M elements Jelly distribution

100K elements flat distribution

100K elements stream distribution

100K elements Jelly distribution

10K elements flat distribution

10K elements stream distribution

10K elements Jelly distribution

Statistics

Statistics for full distributions

  • Title: Statistics for full distributions
Sum Unique Mean St. dev. Min. Max.
IRIs 236,997,015 ~46,868,742 47.40 5.68 25 142
Blank nodes 0 N/A 0.00 0.00 0 0
Literals 35,643,551 ~3,281,882 7.13 0.60 3 34
Simple literals 18,591,732 ~2,226,850 3.72 2.05 1 20
Datatype literals 8,423,981 ~21,449 1.68 0.59 0 4
Language literals 8,627,838 ~1,036,170 1.73 1.48 0 32
Datatypes 8,168,672 4 1.63 0.51 0 2
ASCII control chars 11 N/A 0.00 0.00 0 2
Quoted triples 0 N/A 0.00 0.00 0 0
Subjects 46,588,350 ~30,607,843 9.32 4.43 3 68
Predicates 97,782,581 ~79 19.56 1.81 11 22
Objects 159,866,280 ~37,194,813 31.97 6.03 14 157
Graphs 20,000,000 ~19,930,198 4.00 0.00 4 4
Statements 171,885,662 N/A 34.38 9.93 16 196
Bytes per statement N/A N/A 334.54 111.13 0.68 2,394.89

Statistics for 1M distributions

  • Title: Statistics for 1M distributions
Sum Unique Mean St. dev. Min. Max.
IRIs 48,861,863 ~7,036,849 48.86 3.03 40 100
Blank nodes 0 N/A 0.00 0.00 0 0
Literals 7,030,328 ~622,174 7.03 0.24 7 22
Simple literals 2,321,606 ~87,332 2.32 1.11 2 20
Datatype literals 1,944,837 ~2,895 1.94 0.27 1 3
Language literals 2,763,885 ~531,716 2.76 0.81 0 3
Datatypes 1,935,515 3 1.94 0.25 1 2
ASCII control chars 2 N/A 0.00 0.00 0 2
Quoted triples 0 N/A 0.00 0.00 0 0
Subjects 9,350,387 ~5,033,320 9.35 2.33 6 52
Predicates 20,738,344 ~37 20.74 0.94 17 22
Objects 32,151,723 ~4,725,505 32.15 3.09 27 89
Graphs 4,000,000 ~3,991,911 4.00 0.00 4 4
Statements 33,423,542 N/A 33.42 4.64 28 135
Bytes per statement N/A N/A 319.85 50.98 0.68 1,752.75

Statistics for 100K distributions

  • Title: Statistics for 100K distributions
Sum Unique Mean St. dev. Min. Max.
IRIs 4,907,266 ~676,705 49.07 1.94 44 50
Blank nodes 0 N/A 0.00 0.00 0 0
Literals 700,000 ~60,512 7.00 0.00 7 7
Simple literals 200,000 ~4 2.00 0.00 2 2
Datatype literals 200,000 ~154 2.00 0.00 2 2
Language literals 300,000 ~60,358 3.00 0.00 3 3
Datatypes 200,000 2 2.00 0.00 2 2
ASCII control chars 2 N/A 0.00 0.01 0 2
Quoted triples 0 N/A 0.00 0.00 0 0
Subjects 925,880 ~482,245 9.26 1.55 6 10
Predicates 2,100,000 ~25 21.00 0.00 21 21
Objects 3,207,266 ~434,273 32.07 1.94 27 33
Graphs 400,000 ~402,451 4.00 0.00 4 4
Statements 3,307,350 N/A 33.07 1.94 29 34
Bytes per statement N/A N/A 312.67 6.95 0.68 370.00

Statistics for 10K distributions

  • Title: Statistics for 10K distributions
Sum Unique Mean St. dev. Min. Max.
IRIs 500,000 ~73,201 50.00 0.00 50 50
Blank nodes 0 N/A 0.00 0.00 0 0
Literals 70,000 ~6,885 7.00 0.00 7 7
Simple literals 20,000 ~2 2.00 0.00 2 2
Datatype literals 20,000 ~15 2.00 0.00 2 2
Language literals 30,000 ~6,868 3.00 0.00 3 3
Datatypes 20,000 2 2.00 0.00 2 2
ASCII control chars 0 N/A 0.00 0.00 0 0
Quoted triples 0 N/A 0.00 0.00 0 0
Subjects 100,000 ~56,465 10.00 0.00 10 10
Predicates 210,000 ~21 21.00 0.00 21 21
Objects 330,000 ~50,213 33.00 0.00 33 33
Graphs 40,000 ~40,132 4.00 0.00 4 4
Statements 340,000 N/A 34.00 0.00 34 34
Bytes per statement N/A N/A 313.31 3.94 0.68 342.94